This lesson is being piloted (Beta version)

Computing Basics for DUNE - Revised 2025 edition: 2025 Speedrun of SL7 setup and test

Start the Apptainer

Choose your apptainer

gpvm apptainer

/cvmfs/oasis.opensciencegrid.org/mis/apptainer/current/bin/apptainer shell --shell=/bin/bash -B /cvmfs,/exp,/nashome,/pnfs/dune,/opt,/run/user,/etc/hostname,/etc/hosts,/etc/krb5.conf --ipc --pid /cvmfs/singularity.opensciencegrid.org/fermilab/fnal-dev-sl7:latest

cern apptainer

/cvmfs/oasis.opensciencegrid.org/mis/apptainer/current/bin/apptainer shell --shell=/bin/bash -B /cvmfs,/afs,/opt,/run/user,/etc/hostname --ipc --pid /cvmfs/singularity.opensciencegrid.org/fermilab/fnal-dev-sl7:latest
# use ups to find programs - this only works on SL7

source /cvmfs/dune.opensciencegrid.org/products/dune/setup_dune.sh

# do some data access setup
export IFDH_CP_MAXRETRIES=0  # no retries
export METACAT_SERVER_URL=https://metacat.fnal.gov:9443/dune_meta_prod/app
export METACAT_AUTH_SERVER_URL=https://metacat.fnal.gov:8143/auth/dune

# access some disks
export DUNEDATA=/exp/dune/data/users/$USER
export DUNEAPP=/exp/dune/app/users/$USER
export PERSISTENT=/pnfs/dune/persistent/users/$USER
export SCRATCH=/pnfs/dune/scratch/users/$USER

# set up the full DUNE SW suite

export DUNELAR_VERSION=v10_07_00d00 # you want to update this
export DUNELAR_QUALIFIER=e26:prof # you want to update this

setup -B dunesw ${DUNELAR_VERSION} -q ${DUNELAR_QUALIFIER}

To get a token that allows you to access files interactively in SL7

htgettoken -i dune --vaultserver htvaultprod.fnal.gov -r interactive 
export BEARER_TOKEN_FILE=/run/user/`id -u`/bt_u`id -u`

put this in a file called dune_token.sh

The first time you do this you will see:

Attempting kerberos auth with https://htvaultprod.fnal.gov:8200 ... succeeded
Attempting to get token from https://htvaultprod.fnal.gov:8200 ... failed
Attempting OIDC authentication with https://htvaultprod.fnal.gov:8200

Complete the authentication at:
    https://cilogon.org/device/?user_code=XXXX
No web open command defined, please copy/paste the above to any web browser
Waiting for response in web browser

Go to that web site and authenticate

Storing vault token in /tmp/vt_uXXX
Saving credkey to /nashome/s/USER/.config/htgettoken/credkey-dune-interactive
Saving refresh token ... done
Attempting to get token from https://htvaultprod.fnal.gov:8200 ... succeeded
Storing bearer token in /run/user/XXXX/bt_XXXX

Accessing rucio and justin require a bit more

in SL7 - put this in a file called dune_data_sl7.sh so you can use it again.

setup metacat
setup rucio
export RUCIO_ACCOUNT=justinreadonly
setup justin
justin time # this just tells justin that you exist and want to authenticate
justin get-token # this actually gets a token and associated proxy for access to rucio and the batch system

The first time you do this you will get asked (after the justin time command)

To authorize this computer to run the justin command, visit this page with your
usual web browser and follow the instructions within the next 10 minutes:
https://dunejustin.fnal.gov/authorize/XXXXX

Check that the Session ID displayed on that page is BfhVBmQ

Once you've followed the instructions on that web page, please run the command
you tried again. You won't need to authorize this computer again for 7 days.

Once again go to the website that appears and authenticate. After the first authentication to justIn you need to do a second justin call

justin get-token

You will need to do this sequence weekly as your justin access expires.

Note:

Despite the name of this command it gets you both a token and a special X.509 proxy and it is the latter you are actually using to talk to rucio in these SL7 examples

check root

root -l root://meitner.tier2.hep.manchester.ac.uk:1094//cephfs/experiments/dune/RSE/fardet-vd/fd/a6/prodmarley_nue_es_flat_radiological_decay0_dunevd10kt_1x8x14_3view_30deg_20250217T033222Z_gen_004122_supernova_g4stage1_g4stage2_detsim_reco.root
.q

check rucio


rucio replica list file fardet-vd:prodmarley_nue_es_flat_radiological_decay0_dunevd10kt_1x8x14_3view_30deg_20250217T033222Z_gen_004122_supernova_g4stage1_g4stage2_detsim_reco.root --protocols=root --pfns